[bsmap] @Wed Jan 13 16:14:17 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 16:14:47 2021 93 reference seqs loaded, total size 3137161264 bp. 30 secs passed [bsmap] @Wed Jan 13 16:16:40 2021 create seed table. 143 secs passed [bsmap] @Wed Jan 13 16:16:40 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041521_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041521_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 20:00:24 2021 total read pairs: 20496473 total time consumed: 13567 secs aligned pairs: 14517310 (70.8%), unique pairs: 14517310 (70.8%), suppressed non-unique pairs: 2661236 (13.0%) unpaired read #1: 1064011 (5.2%), unique reads: 1064011 (5.2%), suppressed non-unique reads: 3280666 (16.0%) unpaired read #2: 659342 (3.2%), unique reads: 659342 (3.2%), suppressed non-unique reads: 3300598 (16.1%)