[bsmap] @Wed Jan 13 17:47:58 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 17:48:19 2021 93 reference seqs loaded, total size 3137161264 bp. 21 secs passed [bsmap] @Wed Jan 13 17:49:08 2021 create seed table. 70 secs passed [bsmap] @Wed Jan 13 17:49:08 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041522_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041522_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 19:21:18 2021 total read pairs: 12076263 total time consumed: 5600 secs aligned pairs: 8459626 (70.1%), unique pairs: 8459626 (70.1%), suppressed non-unique pairs: 1625677 (13.5%) unpaired read #1: 583070 (4.8%), unique reads: 583070 (4.8%), suppressed non-unique reads: 1987822 (16.5%) unpaired read #2: 435157 (3.6%), unique reads: 435157 (3.6%), suppressed non-unique reads: 2032032 (16.8%)