[bsmap] @Wed Jan 13 18:42:58 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 18:44:08 2021 93 reference seqs loaded, total size 3137161264 bp. 70 secs passed [bsmap] @Wed Jan 13 18:47:33 2021 create seed table. 275 secs passed [bsmap] @Wed Jan 13 18:47:33 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041585_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041585_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Thu Jan 14 00:44:00 2021 total read pairs: 26911464 total time consumed: 21662 secs aligned pairs: 19504310 (72.5%), unique pairs: 19504310 (72.5%), suppressed non-unique pairs: 3480625 (12.9%) unpaired read #1: 1084727 (4.0%), unique reads: 1084727 (4.0%), suppressed non-unique reads: 4288968 (15.9%) unpaired read #2: 869194 (3.2%), unique reads: 869194 (3.2%), suppressed non-unique reads: 4373040 (16.2%)