[bsmap] @Wed Jan 13 19:34:20 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 19:34:40 2021 93 reference seqs loaded, total size 3137161264 bp. 20 secs passed [bsmap] @Wed Jan 13 19:35:21 2021 create seed table. 61 secs passed [bsmap] @Wed Jan 13 19:35:21 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041590_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041590_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 19:48:05 2021 total read pairs: 4309008 total time consumed: 825 secs aligned pairs: 3191060 (74.1%), unique pairs: 3191060 (74.1%), suppressed non-unique pairs: 492256 (11.4%) unpaired read #1: 205783 (4.8%), unique reads: 205783 (4.8%), suppressed non-unique reads: 577718 (13.4%) unpaired read #2: 118327 (2.7%), unique reads: 118327 (2.7%), suppressed non-unique reads: 574413 (13.3%)