[bsmap] @Wed Jan 13 16:13:18 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 16:13:46 2021 93 reference seqs loaded, total size 3137161264 bp. 28 secs passed [bsmap] @Wed Jan 13 16:15:39 2021 create seed table. 141 secs passed [bsmap] @Wed Jan 13 16:15:39 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041591_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041591_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 18:31:20 2021 total read pairs: 21356160 total time consumed: 8282 secs aligned pairs: 15432616 (72.3%), unique pairs: 15432616 (72.3%), suppressed non-unique pairs: 2489553 (11.7%) unpaired read #1: 1107204 (5.2%), unique reads: 1107204 (5.2%), suppressed non-unique reads: 3026934 (14.2%) unpaired read #2: 634682 (3.0%), unique reads: 634682 (3.0%), suppressed non-unique reads: 3029294 (14.2%)