[bsmap] @Wed Jan 13 15:57:13 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 15:57:34 2021 93 reference seqs loaded, total size 3137161264 bp. 21 secs passed [bsmap] @Wed Jan 13 15:58:34 2021 create seed table. 81 secs passed [bsmap] @Wed Jan 13 15:58:34 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041596_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041596_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 16:59:18 2021 total read pairs: 11596753 total time consumed: 3725 secs aligned pairs: 8054903 (69.5%), unique pairs: 8054903 (69.5%), suppressed non-unique pairs: 1632104 (14.1%) unpaired read #1: 638235 (5.5%), unique reads: 638235 (5.5%), suppressed non-unique reads: 1982449 (17.1%) unpaired read #2: 314684 (2.7%), unique reads: 314684 (2.7%), suppressed non-unique reads: 1954777 (16.9%)