[bsmap] @Wed Jan 13 15:56:43 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 15:57:05 2021 93 reference seqs loaded, total size 3137161264 bp. 22 secs passed [bsmap] @Wed Jan 13 15:58:13 2021 create seed table. 90 secs passed [bsmap] @Wed Jan 13 15:58:13 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041597_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041597_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 16:56:59 2021 total read pairs: 11325936 total time consumed: 3616 secs aligned pairs: 8059785 (71.2%), unique pairs: 8059785 (71.2%), suppressed non-unique pairs: 1405813 (12.4%) unpaired read #1: 674606 (6.0%), unique reads: 674606 (6.0%), suppressed non-unique reads: 1732664 (15.3%) unpaired read #2: 337180 (3.0%), unique reads: 337180 (3.0%), suppressed non-unique reads: 1728661 (15.3%)