[bsmap] @Wed Jan 13 18:39:05 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 18:39:48 2021 93 reference seqs loaded, total size 3137161264 bp. 43 secs passed [bsmap] @Wed Jan 13 18:42:43 2021 create seed table. 218 secs passed [bsmap] @Wed Jan 13 18:42:43 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041599_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041599_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 20:53:57 2021 total read pairs: 26788862 total time consumed: 8092 secs aligned pairs: 18975445 (70.8%), unique pairs: 18975445 (70.8%), suppressed non-unique pairs: 3656649 (13.6%) unpaired read #1: 1158557 (4.3%), unique reads: 1158557 (4.3%), suppressed non-unique reads: 4529482 (16.9%) unpaired read #2: 814570 (3.0%), unique reads: 814570 (3.0%), suppressed non-unique reads: 4600820 (17.2%)