[bsmap] @Wed Dec 16 14:39:29 2020 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Dec 16 14:40:18 2020 93 reference seqs loaded, total size 3137161264 bp. 49 secs passed [bsmap] @Wed Dec 16 14:43:35 2020 create seed table. 246 secs passed [bsmap] @Wed Dec 16 14:43:35 2020 Pair-end alignment(8 threads), Input read file #1: RRBS20A041601_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041601_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Dec 16 16:38:33 2020 total read pairs: 11488368 total time consumed: 7144 secs aligned pairs: 8116040 (70.6%), unique pairs: 8116040 (70.6%), suppressed non-unique pairs: 1487862 (13.0%) unpaired read #1: 615847 (5.4%), unique reads: 615847 (5.4%), suppressed non-unique reads: 1854097 (16.1%) unpaired read #2: 365024 (3.2%), unique reads: 365024 (3.2%), suppressed non-unique reads: 1872616 (16.3%)