[bsmap] @Wed Jan 13 08:09:06 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 08:09:26 2021 93 reference seqs loaded, total size 3137161264 bp. 20 secs passed [bsmap] @Wed Jan 13 08:10:19 2021 create seed table. 73 secs passed [bsmap] @Wed Jan 13 08:10:19 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041607_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041607_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 10:02:42 2021 total read pairs: 20417632 total time consumed: 6816 secs aligned pairs: 14257225 (69.8%), unique pairs: 14257225 (69.8%), suppressed non-unique pairs: 2762809 (13.5%) unpaired read #1: 1178603 (5.8%), unique reads: 1178603 (5.8%), suppressed non-unique reads: 3447272 (16.9%) unpaired read #2: 608017 (3.0%), unique reads: 608017 (3.0%), suppressed non-unique reads: 3442210 (16.9%)