[bsmap] @Wed Jan 13 21:06:35 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 21:07:14 2021 93 reference seqs loaded, total size 3137161264 bp. 39 secs passed [bsmap] @Wed Jan 13 21:09:27 2021 create seed table. 172 secs passed [bsmap] @Wed Jan 13 21:09:27 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041608_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041608_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 23:33:38 2021 total read pairs: 37103749 total time consumed: 8823 secs aligned pairs: 27150952 (73.2%), unique pairs: 27150952 (73.2%), suppressed non-unique pairs: 4274821 (11.5%) unpaired read #1: 1766111 (4.8%), unique reads: 1766111 (4.8%), suppressed non-unique reads: 5188733 (14.0%) unpaired read #2: 1041749 (2.8%), unique reads: 1041749 (2.8%), suppressed non-unique reads: 5232499 (14.1%)