[bsmap] @Wed Jan 13 20:18:22 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 20:19:12 2021 93 reference seqs loaded, total size 3137161264 bp. 50 secs passed [bsmap] @Wed Jan 13 20:21:33 2021 create seed table. 191 secs passed [bsmap] @Wed Jan 13 20:21:33 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041612_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041612_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Thu Jan 14 00:03:17 2021 total read pairs: 23554880 total time consumed: 13495 secs aligned pairs: 17496807 (74.3%), unique pairs: 17496807 (74.3%), suppressed non-unique pairs: 2439694 (10.4%) unpaired read #1: 1082687 (4.6%), unique reads: 1082687 (4.6%), suppressed non-unique reads: 2875755 (12.2%) unpaired read #2: 675751 (2.9%), unique reads: 675751 (2.9%), suppressed non-unique reads: 2884682 (12.2%)