[bsmap] @Wed Jan 13 07:50:50 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 07:51:11 2021 93 reference seqs loaded, total size 3137161264 bp. 21 secs passed [bsmap] @Wed Jan 13 07:52:26 2021 create seed table. 96 secs passed [bsmap] @Wed Jan 13 07:52:26 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041627_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041627_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 08:20:57 2021 total read pairs: 6901221 total time consumed: 1807 secs aligned pairs: 4793480 (69.5%), unique pairs: 4793480 (69.5%), suppressed non-unique pairs: 957450 (13.9%) unpaired read #1: 393709 (5.7%), unique reads: 393709 (5.7%), suppressed non-unique reads: 1172031 (17.0%) unpaired read #2: 210826 (3.1%), unique reads: 210826 (3.1%), suppressed non-unique reads: 1163997 (16.9%)