[bsmap] @Wed Jan 13 19:04:17 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 19:04:49 2021 93 reference seqs loaded, total size 3137161264 bp. 32 secs passed [bsmap] @Wed Jan 13 19:06:00 2021 create seed table. 103 secs passed [bsmap] @Wed Jan 13 19:06:00 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041628_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041628_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 21:22:17 2021 total read pairs: 37129330 total time consumed: 8280 secs aligned pairs: 26467782 (71.3%), unique pairs: 26467782 (71.3%), suppressed non-unique pairs: 4764612 (12.8%) unpaired read #1: 1578303 (4.3%), unique reads: 1578303 (4.3%), suppressed non-unique reads: 5900310 (15.9%) unpaired read #2: 1461302 (3.9%), unique reads: 1461302 (3.9%), suppressed non-unique reads: 6148509 (16.6%)