[bsmap] @Wed Jan 13 16:28:29 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 16:28:49 2021 93 reference seqs loaded, total size 3137161264 bp. 20 secs passed [bsmap] @Wed Jan 13 16:29:51 2021 create seed table. 82 secs passed [bsmap] @Wed Jan 13 16:29:51 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041629_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041629_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 18:34:30 2021 total read pairs: 35034805 total time consumed: 7561 secs aligned pairs: 24202633 (69.1%), unique pairs: 24202633 (69.1%), suppressed non-unique pairs: 4813502 (13.7%) unpaired read #1: 1918711 (5.5%), unique reads: 1918711 (5.5%), suppressed non-unique reads: 5962423 (17.0%) unpaired read #2: 1018228 (2.9%), unique reads: 1018228 (2.9%), suppressed non-unique reads: 5916520 (16.9%)