[bsmap] @Wed Jan 13 19:34:12 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 19:35:52 2021 93 reference seqs loaded, total size 3137161264 bp. 100 secs passed [bsmap] @Wed Jan 13 19:40:20 2021 create seed table. 368 secs passed [bsmap] @Wed Jan 13 19:40:20 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041686_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041686_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Thu Jan 14 01:20:49 2021 total read pairs: 33054967 total time consumed: 20797 secs aligned pairs: 23336934 (70.6%), unique pairs: 23336934 (70.6%), suppressed non-unique pairs: 4388693 (13.3%) unpaired read #1: 1528909 (4.6%), unique reads: 1528909 (4.6%), suppressed non-unique reads: 5379191 (16.3%) unpaired read #2: 1120564 (3.4%), unique reads: 1120564 (3.4%), suppressed non-unique reads: 5492608 (16.6%)