[bsmap] @Wed Jan 13 16:11:15 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 16:11:54 2021 93 reference seqs loaded, total size 3137161264 bp. 39 secs passed [bsmap] @Wed Jan 13 16:13:37 2021 create seed table. 142 secs passed [bsmap] @Wed Jan 13 16:13:37 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041687_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041687_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 19:19:29 2021 total read pairs: 18704061 total time consumed: 11294 secs aligned pairs: 13208879 (70.6%), unique pairs: 13208879 (70.6%), suppressed non-unique pairs: 2313379 (12.4%) unpaired read #1: 974466 (5.2%), unique reads: 974466 (5.2%), suppressed non-unique reads: 2802821 (15.0%) unpaired read #2: 582740 (3.1%), unique reads: 582740 (3.1%), suppressed non-unique reads: 2792297 (14.9%)