[bsmap] @Wed Jan 13 16:09:01 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Wed Jan 13 16:09:24 2021 93 reference seqs loaded, total size 3137161264 bp. 23 secs passed [bsmap] @Wed Jan 13 16:10:58 2021 create seed table. 117 secs passed [bsmap] @Wed Jan 13 16:10:58 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A041691_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A041691_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Wed Jan 13 18:27:34 2021 total read pairs: 16595990 total time consumed: 8313 secs aligned pairs: 11629917 (70.1%), unique pairs: 11629917 (70.1%), suppressed non-unique pairs: 2205047 (13.3%) unpaired read #1: 974379 (5.9%), unique reads: 974379 (5.9%), suppressed non-unique reads: 2701860 (16.3%) unpaired read #2: 491191 (3.0%), unique reads: 491191 (3.0%), suppressed non-unique reads: 2691782 (16.2%)