[bsmap] @Mon Jun 21 00:29:37 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Jun 21 00:30:09 2021 93 reference seqs loaded, total size 3137161264 bp. 32 secs passed [bsmap] @Mon Jun 21 00:34:29 2021 create seed table. 292 secs passed [bsmap] @Mon Jun 21 00:34:29 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A040795_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A040795_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jun 21 01:31:12 2021 total read pairs: 10609697 total time consumed: 3695 secs aligned pairs: 6803520 (64.1%), unique pairs: 6803520 (64.1%), suppressed non-unique pairs: 1314246 (12.4%) unpaired read #1: 568933 (5.4%), unique reads: 568933 (5.4%), suppressed non-unique reads: 1740788 (16.4%) unpaired read #2: 552595 (5.2%), unique reads: 552595 (5.2%), suppressed non-unique reads: 1775011 (16.7%)