[bsmap] @Sun Jun 20 23:55:58 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Sun Jun 20 23:56:24 2021 93 reference seqs loaded, total size 3137161264 bp. 26 secs passed [bsmap] @Sun Jun 20 23:58:58 2021 create seed table. 180 secs passed [bsmap] @Sun Jun 20 23:58:58 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A040873_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A040873_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jun 21 00:22:57 2021 total read pairs: 7138451 total time consumed: 1619 secs aligned pairs: 4784683 (67.0%), unique pairs: 4784683 (67.0%), suppressed non-unique pairs: 1052328 (14.7%) unpaired read #1: 440057 (6.2%), unique reads: 440057 (6.2%), suppressed non-unique reads: 1344711 (18.8%) unpaired read #2: 395232 (5.5%), unique reads: 395232 (5.5%), suppressed non-unique reads: 1349418 (18.9%)