[bsmap] @Mon Jun 21 01:14:03 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Jun 21 01:14:57 2021 93 reference seqs loaded, total size 3137161264 bp. 54 secs passed [bsmap] @Mon Jun 21 01:23:09 2021 create seed table. 546 secs passed [bsmap] @Mon Jun 21 01:23:09 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A040874_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A040874_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jun 21 06:21:28 2021 total read pairs: 36593306 total time consumed: 18445 secs aligned pairs: 24965544 (68.2%), unique pairs: 24965544 (68.2%), suppressed non-unique pairs: 5087203 (13.9%) unpaired read #1: 2360692 (6.5%), unique reads: 2360692 (6.5%), suppressed non-unique reads: 6320086 (17.3%) unpaired read #2: 2122509 (5.8%), unique reads: 2122509 (5.8%), suppressed non-unique reads: 6298706 (17.2%)