[bsmap] @Mon Jun 21 03:50:51 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Jun 21 03:51:13 2021 93 reference seqs loaded, total size 3137161264 bp. 22 secs passed [bsmap] @Mon Jun 21 03:51:59 2021 create seed table. 68 secs passed [bsmap] @Mon Jun 21 03:51:59 2021 Pair-end alignment(8 threads), Input read file #1: RRBS20A040875_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS20A040875_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jun 21 08:54:33 2021 total read pairs: 107181425 total time consumed: 18222 secs aligned pairs: 69800081 (65.1%), unique pairs: 69800081 (65.1%), suppressed non-unique pairs: 17618454 (16.4%) unpaired read #1: 5744663 (5.4%), unique reads: 5744663 (5.4%), suppressed non-unique reads: 22232964 (20.7%) unpaired read #2: 5789073 (5.4%), unique reads: 5789073 (5.4%), suppressed non-unique reads: 22919876 (21.4%)