[bsmap] @Sun Jul 18 21:44:05 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Sun Jul 18 21:44:24 2021 93 reference seqs loaded, total size 3137161264 bp. 19 secs passed [bsmap] @Sun Jul 18 21:45:15 2021 create seed table. 70 secs passed [bsmap] @Sun Jul 18 21:45:15 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000219_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000219_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jul 19 00:40:19 2021 total read pairs: 56859105 total time consumed: 10574 secs aligned pairs: 41836703 (73.6%), unique pairs: 41836703 (73.6%), suppressed non-unique pairs: 6413777 (11.3%) unpaired read #1: 2533022 (4.5%), unique reads: 2533022 (4.5%), suppressed non-unique reads: 6940658 (12.2%) unpaired read #2: 2484422 (4.4%), unique reads: 2484422 (4.4%), suppressed non-unique reads: 7176895 (12.6%)