[bsmap] @Sun Jul 18 22:07:15 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Sun Jul 18 22:07:34 2021 93 reference seqs loaded, total size 3137161264 bp. 19 secs passed [bsmap] @Sun Jul 18 22:08:25 2021 create seed table. 70 secs passed [bsmap] @Sun Jul 18 22:08:25 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000220_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000220_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jul 19 00:50:37 2021 total read pairs: 86372758 total time consumed: 9802 secs aligned pairs: 60457130 (70.0%), unique pairs: 60457130 (70.0%), suppressed non-unique pairs: 14781260 (17.1%) unpaired read #1: 2920638 (3.4%), unique reads: 2920638 (3.4%), suppressed non-unique reads: 16041309 (18.6%) unpaired read #2: 3035656 (3.5%), unique reads: 3035656 (3.5%), suppressed non-unique reads: 16427283 (19.0%)