[bsmap] @Sun Jul 18 21:53:15 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Sun Jul 18 21:53:36 2021 93 reference seqs loaded, total size 3137161264 bp. 21 secs passed [bsmap] @Sun Jul 18 21:54:31 2021 create seed table. 76 secs passed [bsmap] @Sun Jul 18 21:54:31 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000221_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000221_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Jul 19 00:01:00 2021 total read pairs: 78099588 total time consumed: 7665 secs aligned pairs: 52008201 (66.6%), unique pairs: 52008201 (66.6%), suppressed non-unique pairs: 14885385 (19.1%) unpaired read #1: 2975837 (3.8%), unique reads: 2975837 (3.8%), suppressed non-unique reads: 16240870 (20.8%) unpaired read #2: 2744174 (3.5%), unique reads: 2744174 (3.5%), suppressed non-unique reads: 16643333 (21.3%)