[bsmap] @Mon Sep 20 08:34:24 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Sep 20 08:35:28 2021 93 reference seqs loaded, total size 3137161264 bp. 64 secs passed [bsmap] @Mon Sep 20 08:39:41 2021 create seed table. 317 secs passed [bsmap] @Mon Sep 20 08:39:41 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000222_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000222_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Sep 20 15:05:43 2021 total read pairs: 57058583 total time consumed: 23479 secs aligned pairs: 21077393 (36.9%), unique pairs: 21077393 (36.9%), suppressed non-unique pairs: 8036659 (14.1%) unpaired read #1: 2768876 (4.9%), unique reads: 2768876 (4.9%), suppressed non-unique reads: 9885731 (17.3%) unpaired read #2: 3113140 (5.5%), unique reads: 3113140 (5.5%), suppressed non-unique reads: 10423504 (18.3%)