[bsmap] @Sun Jul 18 21:25:23 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Sun Jul 18 21:25:43 2021 93 reference seqs loaded, total size 3137161264 bp. 20 secs passed [bsmap] @Sun Jul 18 21:27:03 2021 create seed table. 100 secs passed [bsmap] @Sun Jul 18 21:27:03 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000231_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000231_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Sun Jul 18 23:02:57 2021 total read pairs: 43404840 total time consumed: 5854 secs aligned pairs: 30200388 (69.6%), unique pairs: 30200388 (69.6%), suppressed non-unique pairs: 6171925 (14.2%) unpaired read #1: 1734620 (4.0%), unique reads: 1734620 (4.0%), suppressed non-unique reads: 6657605 (15.3%) unpaired read #2: 1342025 (3.1%), unique reads: 1342025 (3.1%), suppressed non-unique reads: 6824008 (15.7%)