[bsmap] @Mon Sep 20 06:28:55 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Sep 20 06:29:15 2021 93 reference seqs loaded, total size 3137161264 bp. 20 secs passed [bsmap] @Mon Sep 20 06:30:06 2021 create seed table. 71 secs passed [bsmap] @Mon Sep 20 06:30:06 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000234_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000234_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Sep 20 09:13:47 2021 total read pairs: 28351132 total time consumed: 9892 secs aligned pairs: 18981102 (67.0%), unique pairs: 18981102 (67.0%), suppressed non-unique pairs: 3643283 (12.9%) unpaired read #1: 1277630 (4.5%), unique reads: 1277630 (4.5%), suppressed non-unique reads: 4017212 (14.2%) unpaired read #2: 1077426 (3.8%), unique reads: 1077426 (3.8%), suppressed non-unique reads: 4159530 (14.7%)