[bsmap] @Mon Sep 20 06:34:28 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Sep 20 06:35:00 2021 93 reference seqs loaded, total size 3137161264 bp. 32 secs passed [bsmap] @Mon Sep 20 06:37:09 2021 create seed table. 161 secs passed [bsmap] @Mon Sep 20 06:37:09 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000236_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000236_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Sep 20 10:45:23 2021 total read pairs: 25649342 total time consumed: 15055 secs aligned pairs: 16947652 (66.1%), unique pairs: 16947652 (66.1%), suppressed non-unique pairs: 4071637 (15.9%) unpaired read #1: 1139260 (4.4%), unique reads: 1139260 (4.4%), suppressed non-unique reads: 4480664 (17.5%) unpaired read #2: 1139682 (4.4%), unique reads: 1139682 (4.4%), suppressed non-unique reads: 4700337 (18.3%)