[bsmap] @Mon Sep 20 06:37:04 2021 loading reference file: /sibcb2/bioinformatics/iGenome/Bismark/hg19/hg19.fa (format: FASTA) [bsmap] @Mon Sep 20 06:37:41 2021 93 reference seqs loaded, total size 3137161264 bp. 37 secs passed [bsmap] @Mon Sep 20 06:40:43 2021 create seed table. 219 secs passed [bsmap] @Mon Sep 20 06:40:43 2021 Pair-end alignment(8 threads), Input read file #1: RRBS21T000238_R1_val_1.fq.gz (format: gzipped FASTQ) Input read file #2: RRBS21T000238_R2_val_2.fq.gz (format: gzipped FASTQ) Output: STDOUT (format: SAM) [bsmap] @Mon Sep 20 10:31:55 2021 total read pairs: 36514800 total time consumed: 14091 secs aligned pairs: 25195741 (69.0%), unique pairs: 25195741 (69.0%), suppressed non-unique pairs: 5388863 (14.8%) unpaired read #1: 1775595 (4.9%), unique reads: 1775595 (4.9%), suppressed non-unique reads: 5952529 (16.3%) unpaired read #2: 1642217 (4.5%), unique reads: 1642217 (4.5%), suppressed non-unique reads: 6167108 (16.9%)